Package index
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MANGO_ANALYSIS() - Run the MANGO analysis pipeline
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MANGO_COMPARE() - Compute MANGO tree scores across multiple cases
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MANGO_COMPARE_SINGLE() - Compute MANGO tree scores for a single case
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MANGO_HeatMap() - Draw a heatmap of MANGO results
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MANGO_PREPROCESSING() - Run GO enrichment preprocessing for MANGO
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MANGO_SEPERATE() - Separate MANGO terms by condition specificity (with PASS/FAIL filtering)
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MANGO_SEPERATE_forDA() - Differential-activity (DA) tree filtering for selected conditions
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MANGO_SEPERATE_forMULTI_range() - Select significant MANGO terms within a condition range
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MANGO_TERMLISTING() - Build the MANGO term tree list across multiple cases
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MANGO_TERMLISTING_single() - Build the MANGO term tree list for a single case
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MANGO_TERM_PLOT_forSINGLE() - Plot MANGO terms for a single tree (bar or chord)
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MANGO_TERM_barPLOT_forMULTI() - MANGO multi-case term bar plot (term-level)
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MANGO_TREE_PLOT_forSINGLE() - Plot MANGO trees for a single condition
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MANGO_TREE_cirPLOT_forMULTI() - MANGO multi-case circular plot (tree-level)
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theme_dose() - MANGO default plotting theme